| Pelican Lake near Breezy Point | 8,367 | 104 ft | 16.8 ft | zebra mussel |
| Whitefish Lake near Cross Lake | 7,714 | 138 ft | 13.9 ft | zebra mussel |
| North Long Lake near Merrifield | 6,190 | 97 ft | 15.2 ft | Eurasian watermilfoil, zebra mussel |
| Edward Lake near Merrifield | 2,575 | 75 ft | 15.5 ft | zebra mussel |
| Bay near Deerwood (Crow Wing) | 2,330 | 74 ft | 17.0 ft | Eurasian watermilfoil, zebra mussel |
| Cross Lake near Cross Lake | 1,815 | 84 ft | 16.2 ft | zebra mussel |
| Platte Lake near Sullivan | 1,663 | 23 ft | 5.9 ft | Not listed |
| Round Lake near Nisswa | 1,650 | 51 ft | 14.6 ft | zebra mussel |
| Big Trout Lake near Manhattan Beach | 1,366 | 128 ft | 15.7 ft | zebra mussel |
| South Long Lake near Brainerd | 1,309 | 47 ft | 9.1 ft | faucet snail, zebra mussel |
| Lake Hubert near Nisswa | 1,288 | 83 ft | 18.0 ft | zebra mussel |
| Serpent Lake near Crosby | 1,116 | 65 ft | 22.1 ft | zebra mussel |
| Borden Lake near Garrison | 1,011 | 84 ft | 10.6 ft | Not listed |
| Horseshoe Lake near Cross Lake | 922 | 56 ft | 14.9 ft | zebra mussel |
| Clearwater Lake near Deerwood (Crow Wing) | 905.5 | 54 ft | 13.0 ft | Eurasian watermilfoil |
| Upper Mission Lake near Merrifield | 881.6 | 36 ft | 10.9 ft | Eurasian watermilfoil |
| Rush Lake near Cross Lake | 857.8 | 105 ft | 17.2 ft | starry stonewort, zebra mussel |
| Rabbit Lake | 840 | 337 ft | 14.4 ft | zebra mussel, zebra mussel |
| Upper South Long Lake near Brainerd | 804.3 | 47 ft | 7.6 ft | Eurasian watermilfoil, zebra mussel |
| Lower Mission Lake near Merrifield | 732.2 | 27 ft | 7.6 ft | Eurasian watermilfoil |
| Emily Lake near Emily | 720.7 | 13 ft | 3.0 ft | Eurasian watermilfoil |
| Ossawinnamakee Lake near Ideal Corners | 711.3 | 63 ft | 20.4 ft | Eurasian watermilfoil, zebra mussel |
| Whitefish Lake near Garrison | 709.2 | 62 ft | 8.5 ft | Not listed |
| Nokay Lake near Brainerd | 703.6 | 42 ft | 9.6 ft | Not listed |
| Lower Hay Lake near Jenkins | 700.2 | 100 ft | 18.8 ft | zebra mussel |
| Rabbit (East Portion) Lake near Cuyuna | 669.6 | 337 ft | 14.2 ft | zebra mussel |
| Ruth Lake near Emily | 599.2 | 39 ft | 16.0 ft | Eurasian watermilfoil, zebra mussel |
| Upper Hay Lake near Jenkins | 595.7 | 42 ft | 9.8 ft | zebra mussel |
| Lower Cullen Lake near Nisswa | 560 | 39 ft | 15.6 ft | zebra mussel |
| Rabbit (West Portion) Lake near Cuyuna | 535.9 | 50 ft | 14.6 ft | zebra mussel |
| Camp Lake near Pine Center | 533.6 | 42 ft | 8.9 ft | Not listed |
| Lower Dean Lake near Wolford | 533 | 7 ft | 4.0 ft | Not listed |
| Red Sand Lake near Brainerd | 521.4 | 23 ft | 9.7 ft | Not listed |
| Ross Lake near Little Pine | 491.8 | 30 ft | 3.6 ft | Not listed |
| Smith Lake near Garrison | 490.8 | 54 ft | 11.7 ft | zebra mussel |
| Crooked Lake near Garrison | 462.7 | 72 ft | 14.4 ft | Eurasian watermilfoil |
| Birchdale Lake near Little Pine | 450 | | 4.1 ft | Not listed |
| West Fox Lake near Fifty Lakes | 449.4 | 55 ft | 15.9 ft | Not listed |
| Sibley Lake near Pequot Lakes | 444.2 | 40 ft | 6.0 ft | Not listed |
| Gladstone Lake near Nisswa | 437.1 | 36 ft | 10.9 ft | zebra mussel |
| Upper Cullen Lake near Breezy Point | 434.6 | 40 ft | 9.0 ft | Not listed |
| Mitchell Lake near Emily | 429.1 | 78 ft | 8.1 ft | zebra mussel |
| Rice Lake near Brainerd | 418.4 | 25 ft | 5.5 ft | zebra mussel |
| Lizzie Lake near Pontoria | 413.9 | 13 ft | 7.3 ft | Not listed |
| White Sand Lake near Baxter | 413.2 | 27 ft | 12.5 ft | Eurasian watermilfoil, zebra mussel |
| Mary Lake near Emily | 412.6 | 34 ft | 4.6 ft | Eurasian watermilfoil |
| Bass Lake near Merrifield | 399.1 | 38 ft | 14.9 ft | Not listed |
| Middle Cullen Lake near Nisswa | 396.6 | 48 ft | 13.1 ft | starry stonewort, zebra mussel |
| Goodrich Lake near Cross Lake | 382.1 | 35 ft | 13.9 ft | Not listed |
| Crow Wing Lake near Fort Ripley | 378.9 | 26 ft | 6.5 ft | Not listed |
| Gilbert Lake near Brainerd | 356.6 | 45 ft | 13.7 ft | zebra mussel |
| Greer Lake near Cross Lake | 354.4 | 36 ft | 10.2 ft | Not listed |
| Eagle Lake near Fifty Lakes | 349.8 | 36 ft | 9.7 ft | zebra mussel |
| Bertha Lake near Jenkins | 336.9 | 64 ft | 16.8 ft | zebra mussel |
| Mollie Lake near Merrifield | 334.2 | 7 ft | 8.0 ft | Not listed |
| Little Pine Lake near Cross Lake | 329.9 | 36 ft | 9.4 ft | zebra mussel |
| Pine Lake near Cross Lake | 323.6 | 16.9 ft | 10.8 ft | Eurasian watermilfoil, zebra mussel |
| Roy Lake near Nisswa | 319.7 | 26 ft | 12.5 ft | zebra mussel |
| Nelson Lake near Pine Knoll | 318.6 | 12 ft | 4.2 ft | Not listed |
| Adney Lake near Cross Lake | 310.1 | 27 ft | 15.3 ft | Not listed |
| Duck Lake near Little Pine | 310 | | 2.9 ft | Not listed |
| Hamlet Lake near Deerwood (Crow Wing) | 307.2 | 88 ft | 18.6 ft | Not listed |
| Clark Lake near Nisswa | 305.4 | 31 ft | 10.0 ft | zebra mussel |
| Lows Lake near Little Pine | 301.6 | 9 ft | 4.9 ft | Not listed |
| Whipple Lake near Baxter | 301.4 | 28.7 ft | 9.6 ft | Not listed |
| Arrowhead Lake near Manhattan Beach | 296.4 | 13 ft | 6.7 ft | zebra mussel |
| Kego Lake near Fifty Lakes | 296.1 | 20 ft | 8.3 ft | Not listed |
| Portage Lake near Garrison | 286.8 | 37 ft | 11.4 ft | Eurasian watermilfoil |
| Bass Lake near Merrifield | 285.2 | 24 ft | 12.5 ft | Not listed |
| Dahler Lake near Emily | 277 | 5 ft | 4.8 ft | Not listed |
| Clough Lake near Chickamaw Beach | 274 | 9 ft | 9.8 ft | Not listed |
| Dolney Lake near Emily | 271.6 | 16 ft | 7.5 ft | Not listed |
| Mahnomen, Alstead & Arco Lake near Armour Number Two Mine | 271.6 | 525 ft | 20.2 ft | Eurasian watermilfoil, zebra mussel, zebra mussel, zebra mussel |
| Little Pelican Lake near Breezy Point | 271.4 | 34 ft | 16.7 ft | Not listed |
| Perch Lake near Baxter | 265.9 | 40 ft | 15.8 ft | zebra mussel |
| Garden Lake near Lake Hubert | 262 | 6 ft | 5.7 ft | Not listed |
| Upper Dean Lake near Emily | 259.2 | 24 ft | 4.2 ft | Not listed |
| Daggett Lake near Cross Lake | 258.3 | 23 ft | 8.9 ft | zebra mussel |
| Fool Lake near Mission | 250 | 17 ft | 8.0 ft | Not listed |
| Eagle Lake near Klondyke | 249 | 44 ft | 9.2 ft | Not listed |
| East Fox Lake near Fifty Lakes | 240.9 | 65 ft | 16.6 ft | Not listed |
| Ox Lake near Manhattan Beach | 240.8 | 74 ft | 17.9 ft | Not listed |
| Rogers Lake near Emily | 240 | 64 ft | 15.5 ft | Not listed |
| Island Lake near Emily | 239.5 | 37 ft | 5.0 ft | Not listed |
| Mahnomen Lake near Trommald | 237.9 | 25 ft | 7.1 ft | zebra mussel |
| Lookout Lake near Crosby | 236.5 | 16 ft | 8.9 ft | Not listed |
| Stewart Lake near Swanburg | 234.3 | 40 ft | 9.4 ft | Not listed |
| Island Lake near Cross Lake | 232.4 | 76 ft | 15.9 ft | zebra mussel |
| Horseshoe Lake near Loerch | 232 | | 9.2 ft | Not listed |
| Shirt Lake near Deerwood (Crow Wing) | 231.4 | 38 ft | 14.6 ft | Not listed |
| Clear Lake near Jenkins | 225.9 | 63 ft | 16.7 ft | zebra mussel |
| Nisswa Lake near Nisswa | 219.3 | 23 ft | 12.8 ft | zebra mussel |
| Black Bear Lake near Trommald | 218.1 | 48 ft | 13.2 ft | zebra mussel |
| Wolf Lake near Klondyke | 218 | 3 ft | 5.7 ft | Not listed |
| Stark Lake near Pine Knoll | 217.3 | 66 ft | 7.5 ft | Not listed |
| Hole-in-the-Day Lake near Lake Hubert | 217 | | 6.6 ft | Not listed |
| Lougee Lake near Mission | 211.9 | 53 ft | 15.5 ft | Not listed |
| Clamshell Lake near Jenkins | 211.1 | 44 ft | 14.9 ft | zebra mussel |
| Rock Lake near Pine Center | 210 | | 7.3 ft | Not listed |
| Silver Lake near Merrifield | 208.4 | 23 ft | 15.6 ft | Not listed |
| Black Hoof Lake near Ironton | 201.1 | 29 ft | 10.7 ft | Not listed |
| Pig Lake near Cross Lake | 195.8 | 56 ft | 16.7 ft | zebra mussel |
| Little Hubert Lake near Lake Hubert | 193.9 | 41 ft | 17.1 ft | Not listed |
| Butterfield Lake near Fifty Lakes | 193.7 | 23 ft | 13.7 ft | Not listed |
| Kimball Lake near Jenkins | 189.8 | 77 ft | 18.2 ft | Eurasian watermilfoil, zebra mussel |
| Partridge Lake near Nichols | 187.6 | 42 ft | 16.5 ft | Not listed |
| Agate Lake near Cuyuna | 187 | 25 ft | 12.1 ft | Not listed |
| O'Brien Lake near Cross Lake | 185.7 | 49 ft | 19.2 ft | Not listed |
| Pointon Lake near Ironton | 185.3 | 14 ft | 9.3 ft | Not listed |
| Sebie Lake near Fort Ripley | 185.3 | 27 ft | 4.4 ft | Not listed |
| Mud Lake near Brainerd | 185 | | 7.2 ft | Not listed |
| Rice Lake near Oreland | 185 | | 4.2 ft | Not listed |
| Jail Lake near Pine River | 183.5 | 22 ft | 3.2 ft | Not listed |
| Placid Lake near Bay Lake | 183.4 | 39 ft | 16.7 ft | Not listed |
| Erskine Lake near Pine Center | 182.3 | 14 ft | 6.1 ft | Not listed |
| Perch Lake near Merrifield | 181 | 6 ft | 6.1 ft | Not listed |
| Rice Lake near Lake Hubert | 181 | 3 ft | 4.6 ft | Not listed |
| Blue Lake near Emily | 177.3 | 48 ft | 21.4 ft | Not listed |
| Little Rabbit Lake near Riverton | 172.2 | 30 ft | 11.0 ft | zebra mussel |
| Twenty Two Lake near Pine Center | 169 | | 5.4 ft | Not listed |
| Grave Lake near Brainerd | 168.6 | 13 ft | 4.1 ft | Not listed |
| Rice Lake near Garrison | 168 | | 1.9 ft | Not listed |
| Reno Lake near Deerwood (Crow Wing) | 167.5 | 9 ft | 9.2 ft | Not listed |
| Velvet Lake near Cross Lake | 166.9 | 29 ft | 11.7 ft | Not listed |
| Mayo Lake near Pequot Lakes | 165.2 | 22 ft | 5.0 ft | Not listed |
| Hanks Lake near Garrison | 164.7 | 45 ft | 12.7 ft | Eurasian watermilfoil |
| Perry Lake near Mission | 164.2 | 23 ft | 3.3 ft | Not listed |
| Holt Lake near Garrison | 163.7 | 29 ft | 8.9 ft | zebra mussel |
| East Twin Lake near Nisswa | 163.3 | 45 ft | 16.2 ft | Not listed |
| Duck Lake near Cross Lake | 160 | 13 ft | 9.7 ft | Not listed |
| Scott Lake near Garrison | 157.2 | 49 ft | 11.2 ft | Not listed |
| Edna Lake near Nisswa | 156.4 | 63 ft | 16.8 ft | Not listed |
| Russell Lake near Brainerd | 153 | | 5.4 ft | Not listed |
| Bulldog Lake near Pine Center | 149 | 34 ft | 11.4 ft | Not listed |
| Round Lake near Saint Mathias | 139 | 13 ft | 6.4 ft | Not listed |
| Hartley Lake near East Gull Lake | 135.5 | 20 ft | 8.2 ft | Not listed |
| Wise Lake near Legionville | 135.4 | 44 ft | 13.1 ft | Not listed |
| Little Pine Lake near Little Pine | 135 | | 3.2 ft | Not listed |
| Miller Lake near Garrison | 132.4 | 48 ft | 14.9 ft | Not listed |
| Mud Lake near Woodrow | 132 | | 3.7 ft | Not listed |
| Portage Lake near Deerwood (Crow Wing) | 129.9 | 57 ft | 13.5 ft | Not listed |
| Johnson Lake near Lake Hubert | 129 | | 4.5 ft | Not listed |
| Star Lake near Cross Lake | 127.5 | 83 ft | 18.4 ft | Not listed |
| West Twin Lake near Nisswa | 127.5 | 42 ft | 13.6 ft | Not listed |
| Long / Tame Fish Lake near Deerwood (Crow Wing) | 127.1 | 58 ft | 13.0 ft | Eurasian watermilfoil, zebra mussel |
| Island Lake near Trommald | 125.9 | 36 ft | 10.0 ft | Not listed |
| Smokey Hollow Lake near Outing | 125.5 | 25 ft | 6.3 ft | Not listed |
| Bass Lake near Jenkins | 121 | 47 ft | 17.2 ft | zebra mussel |
| Fawn Lake near Riverton | 120.7 | 24 ft | 2.7 ft | Not listed |
| Sagamore Mine near Riverton | 118.5 | 210 ft | 23.4 ft | Not listed |
| Trout Lake near Emily | 117.2 | 22 ft | 12.8 ft | Not listed |
| Shaffer Lake near Breezy Point | 117 | 6 ft | 4.1 ft | Not listed |
| Pickerel Lake near Emily | 116.5 | 25 ft | 11.2 ft | Not listed |
| Bass Lake near Mission | 114 | | 5.1 ft | Not listed |
| Chrysler Lake near Garrison | 114 | | 3.0 ft | Not listed |
| Cole Lake near Manganese | 114 | | 4.9 ft | Not listed |
| Anna Lake near Emily | 112.2 | 19 ft | 12.2 ft | Not listed |
| Kenney Lake near Garrison | 109.4 | 55 ft | 10.8 ft | Not listed |
| Turtle Lake near Nichols | 108.2 | 33 ft | 9.1 ft | Not listed |
| Goggle Lake near Mission | 107 | | 4.8 ft | Not listed |
| Black Lake near Deerwood (Crow Wing) | 106.4 | 47 ft | 11.4 ft | Not listed |
| Miller Lake near Trommald | 104.9 | 35 ft | 13.1 ft | zebra mussel |
| Markee Lake near Lake Hubert | 103.8 | 33 ft | 14.3 ft | Not listed |
| Mud Lake near Emily | 103 | | 5.8 ft | Not listed |
| June Lake near Trommald | 100 | 51 ft | 13.0 ft | Not listed |
| Little Emily Lake near Outing | 98.9 | 26 ft | 12.3 ft | Not listed |
| Sand Lake near Fifty Lakes | 98.7 | 12 ft | 9.3 ft | Not listed |
| Little Bass Lake near Mission | 94.9 | 49 ft | 22.2 ft | Not listed |
| Carlson Lake near Cuyuna | 92.8 | 37 ft | 11.2 ft | Not listed |
| Sorenson Lake near Merrifield | 92 | 46 ft | 16.3 ft | Not listed |
| Wood Lake near Outing | 91.8 | 38 ft | 14.3 ft | Not listed |
| Papoose Lake near Outing | 88.6 | 21 ft | 11.2 ft | Not listed |
| Nelson Lake near Jenkins | 88 | 65 ft | 17.6 ft | Not listed |
| Indian Jack Lake near Wolford | 86.3 | 25 ft | 6.7 ft | Not listed |
| Lynch Lake near Breezy Point | 85 | 6 ft | 8.3 ft | Not listed |
| Meyer Lake near Manhattan Beach | 85 | 50 ft | 15.7 ft | Not listed |
| Eastham Lake near Emily | 82.8 | 22 ft | 6.7 ft | Not listed |
| Sullivan Lake near Pine Knoll | 81.7 | 38 ft | 5.6 ft | Not listed |
| Clinker Lake near Crosby | 80.7 | 35 ft | 13.1 ft | zebra mussel |
| Twin Lake near Little Pine | 79.2 | 94 ft | 4.5 ft | Not listed |
| Love Lake near Nisswa | 78.5 | 27 ft | 7.5 ft | zebra mussel |
| Bass Lake near Wolford | 78.2 | 12 ft | 5.6 ft | Not listed |
| Fawn Lake near Cross Lake | 77.6 | 24 ft | 13.7 ft | Not listed |
| Mud Lake near Emily | 76.2 | 28 ft | 4.0 ft | Not listed |
| Bonnie Lake near Merrifield | 76.1 | 42 ft | 15.6 ft | Not listed |
| Portage Lake near Riverton | 75.8 | 31 ft | 14.4 ft | Not listed |
| Little Black Hoof Lake near Riverton | 72.3 | 13 ft | 9.8 ft | Not listed |
| Pascoe Lake near Trommald | 68.1 | 12 ft | 10.4 ft | Not listed |
| Island Lake near Breezy Point | 67.9 | 24 ft | 13.4 ft | Not listed |
| Young Lake near Ossipee | 66.9 | 21 ft | 11.0 ft | Not listed |
| Fawn Lake near Nisswa | 64.4 | 40 ft | 14.6 ft | Not listed |
| Loon Lake near Crosby | 60 | 20 ft | 11.3 ft | Not listed |
| Casey Lake near Cuyuna | 59.6 | 39 ft | 2.1 ft | Not listed |
| Turner Lake near Crosby | 56.9 | 36 ft | 13.1 ft | zebra mussel |
| Barbour Lake near Garrison | 56.2 | 54 ft | 9.5 ft | zebra mussel |
| Hay Lake near Riverton | 52.2 | 19 ft | 8.2 ft | Not listed |
| Rose Lake near Klondyke | 51.7 | 11 ft | 13.0 ft | Not listed |
| Loon Lake | 50 | 30 ft | 14.6 ft | zebra mussel |
| Little Star Lake near Cross Lake | 49.2 | 30 ft | 18.0 ft | Not listed |
| Rock Lake near Cross Lake | 49 | 13 ft | 7.6 ft | Not listed |
| Pug Hole Lake near Outing | 46.7 | 30 ft | 13.8 ft | zebra mussel |
| Ann Lake near Deerwood (Crow Wing) | 46.6 | 46 ft | 9.1 ft | Not listed |
| Little Ox Lake near Manhattan Beach | 46.5 | 72 ft | 17.1 ft | Not listed |
| Grass Lake near Breezy Point | 45.5 | 40 ft | 15.7 ft | Not listed |
| Allen Lake near Outing | 44.5 | 46 ft | 12.5 ft | Not listed |
| Knieff Lake near White Hawk | 44.3 | 42 ft | 19.1 ft | Not listed |
| Cascade Lake near Deerwood (Crow Wing) | 44.1 | 24 ft | 11.3 ft | Not listed |
| Peterson Lake near Bay Lake | 43.6 | 21 ft | 14.4 ft | Not listed |
| Horseshoe Lake near Merrifield | 42.6 | 28 ft | 13.9 ft | Not listed |
| Half Moon Lake near Trommald | 42.5 | 23 ft | 8.4 ft | zebra mussel |
| Rushmeyer Lake near Deerwood (Crow Wing) | 41.1 | 26 ft | 6.0 ft | Not listed |
| Bass Lake near Lake Hubert | 39.8 | 18 ft | 13.8 ft | Not listed |
| Taylor Lake near Merrifield | 36.3 | 32 ft | 15.5 ft | Not listed |
| Bass Lake near Crow Wing | 36 | 31 ft | 16.3 ft | Not listed |
| Bassett Lake near Garrison | 35.6 | 38 ft | 12.5 ft | Not listed |
| Horseshoe Lake near Bay Lake | 33.6 | 30 ft | 11.1 ft | Not listed |
| Larson Lake near Deerwood (Crow Wing) | 31.6 | 43 ft | 6.7 ft | Not listed |
| East Twin Lake near Mission | 28 | 28 ft | 16.3 ft | Not listed |
| Butternut Lake near Bay Lake | 26 | 34 ft | 14.9 ft | Not listed |
| Roe Mine near Riverton | 24.8 | 135 ft | 16.7 ft | zebra mussel |
| West Twin Lake near Mission | 23 | 69 ft | 20.7 ft | Not listed |
| Pleasant Lake near Cross Lake | 22.1 | 69 ft | 16.9 ft | Not listed |
| Command Lake near Fifty Lakes | 21.4 | | 13.5 ft | Not listed |
| Little Round Lake near Cross Lake | 20 | 20 ft | 16.1 ft | Not listed |
| Strawberry Lake near Breezy Point | 19.8 | 41 ft | 18.5 ft | Not listed |